Phone: (519) 746-4761

Canadian Address:

169 Lexington Court, Unit I

Waterloo, ON, N2J 4R9


US Address:

Niagara Falls, NY 14305

Canadian/International ship from Waterloo; US orders from Buffalo, NY.

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3D Molecular Model Builder

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3D Molecular Model Builder displays organic molecule structures and calculates parts lists using our Molymod Molecular Models. It recognizes most common chemical names and can potentially build over 50 million molecules. However, it may not recognize every synonym so formats such as InChI or CAS number may work better. (Note: Biomolecules with metal atoms such as hemoglobin may not work nor will proteins, e.g. ricin).

While designed to be as accurate as possible, model builder may not be perfect in all cases & we cannot be held liable for any shortcomings.


  • Molecular Model Builder is best viewed with Chrome, Firefox and Safari. IE 11 & later versions work; older ones don't.
  • Molecule naming correctness is important. For example, "glucose" alone provides a linear molecule, while "beta-glucose" provides a ring structure ("beta glucose" will generate an error)
  • To rotate the 3D model, place your mouse over the image, hold down your left button and move your mouse. To resize the image, just roll your thumbwheel while your mouse is over the image.

Enter Compound(s) (one per line):
Note: Only your first compound will be displayed in 3D
Parts List:  I want to build one compound at a time
 I want to build all compounds at the same time  

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